Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4899750_4900242_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4899750 - 4900242

Intron Length:

493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GCGTCCTCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CGGCTCTGAGCT

Flanking Amino Acid:

FYSAPENFNEEMLRGKRVIV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.4

32.7

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

71.9

0.49

0.9

61.9

39.9

Minor 5ss

33.9

-1.8

3.3

40.8

45.4

Minor BPS

46.4

-0.2

1.7

58.76

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030309

4897019 - 4900330

3312

ENSAPLT00000048068

4895657 - 4900330

4674

ENSAPLT00000029057

4895771 - 4900330

4560

ENSAPLT00000036587

4896541 - 4900330

3790

ENSAPLT00000012310

4896741 - 4900330

3590

ENSAPLT00000034613

4893733 - 4900330

6598

ENSAPLT00000031769

4897888 - 4900330

2443