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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4904707_4905277_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4904707 - 4905277
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATGGC
5'SS Class:
major
3'SS Sequence:
GTTGCCGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGGTCTCTGACG
Flanking Amino Acid:
TARTEAKLQKVVERCQELGA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.7
37.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.7
0.42
1
61.5
40
Minor 5ss
34.1
-1.8
3.3
43.2
38.6
Minor BPS
52.7
-0
1.8
59.88
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011522
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047260
4901680 - 4907027
5348