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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4905409_4906028_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4905409 - 4906028
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTGGATAAATT
Flanking Amino Acid:
FYSARENFKPEMLKGKRVIV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
70.5
0.46
0.9
60.9
40.2
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
46.2
-0.2
2.3
72.41
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011522
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047260
4901680 - 4907027
5348