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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4921591_4929496_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4921591 - 4929496
Intron Length:
7906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCCCACCCACCC
Flanking Amino Acid:
PETYCTPHGEWNMRCCRCDS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
50
0
1.2
61.8
35.9
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
37.7
-0.9
2
45.87
42.5

Associated Gene:

Gene:
LAMB3
Ensembl Gene ID:
ENSAPLG00000011137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011586
4906377 - 4941986
35610