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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4922321_4929496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4922321 - 4929496
Intron Length:
7176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCCCACCCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
50
0
1.2
61.8
35.9
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
37.7
-0.9
2
45.87
42.5

Associated Gene:

Gene:
LAMB3
Ensembl Gene ID:
ENSAPLG00000011137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036972
4920648 - 4943799
23152