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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4930306_4930704_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4930306 - 4930704
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
QHRYPAHGGKVKFSVQDLAS
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.7
75.7
26.2
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
LAMB3
Ensembl Gene ID:
ENSAPLG00000011137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036972
4920648 - 4943799
23152
ENSAPLT00000011586
4906377 - 4941986
35610