Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4932015_4932310_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4932015 - 4932310

Intron Length:

296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTACGGTGA

5'SS Class:

major

3'SS Sequence:

GGGGTTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCAGAT

U12 Branch Point Sequence:

ACTTCCAGCACC

Flanking Amino Acid:

ADDNDPHECQRCNCNGHSTS

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.8

0.3

1.4

57.7

43.9

Major BPS

52.7

0.07

1.1

48.6

36.6

Major PPT

66.5

0.37

1.1

61.5

48.6

Minor 5ss

36.4

-1.5

3.5

44.8

Minor BPS

-0.2

2.2

62.72

42.4

Associated Gene:

Gene:

LAMB3

Ensembl Gene ID:

ENSAPLG00000011137

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036972

4920648 - 4943799

23152

ENSAPLT00000011586

4906377 - 4941986

35610