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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4941693_4942389_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4941693 - 4942389
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCACAG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
AGEKAGRAQQSLQQVKQMYA
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.6
45.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.8
75.8
32.8
Minor 5ss
35.8
-1.6
3.3
47.5
47.9
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
LAMB3
Ensembl Gene ID:
ENSAPLG00000011137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036972
4920648 - 4943799
23152