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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4942544_4942723_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4942544 - 4942723
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
CTTTCCTGCACT
Flanking Amino Acid:
ETSAMMLRMAALETEIQESN
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
76.3
0.59
0.8
73.5
30.7
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
64.8
0.55
2
84.75
41.8

Associated Gene:

Gene:
LAMB3
Ensembl Gene ID:
ENSAPLG00000011137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036972
4920648 - 4943799
23152