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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4946379_4947176_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4946379 - 4947176
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
AGGCACTCACCA
Flanking Amino Acid:
QKNFAKSKWRQAFNAAVVVH
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80.9
0.7
0.7
73.2
31.7
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
42.8
-0.5
1.9
49.72
40.5

Associated Gene:

Gene:
CAMK1G
Ensembl Gene ID:
ENSAPLG00000010810
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011272
4945297 - 4953668
8372