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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4947753_4948117_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4947753 - 4948117
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TCCTCCCAAACA
Flanking Amino Acid:
SPFWDDISESAKDFIRHLLE
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.9
38
Major BPS
61.3
0.28
1
62
30.6
Major PPT
67
0.38
0.9
62.4
32.3
Minor 5ss
39.9
-1.1
3.6
57.8
47.2
Minor BPS
53.3
0.1
2
67.55
44.9

Associated Gene:

Gene:
CAMK1G
Ensembl Gene ID:
ENSAPLG00000010810
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011272
4945297 - 4953668
8372