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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4949548_4949674_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4949548 - 4949674
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCCT
5'SS Class:
major
3'SS Sequence:
TCTGTATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TCTACCACAAAT
Flanking Amino Acid:
ENGIVHRDLKPENLLYLTPE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
78.4
0.64
0.9
72.3
36.8
Minor 5ss
27.3
-2.6
3.3
39.3
46.1
Minor BPS
48.9
-0
2
71.81
44.2

Associated Gene:

Gene:
CAMK1G
Ensembl Gene ID:
ENSAPLG00000010810
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011272
4945297 - 4953668
8372