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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4950186_4950687_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4950186 - 4950687
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTATCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TGTTTCTGACCT
Flanking Amino Acid:
SLENEIAVLKKIKHENIVTL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
79.9
0.67
0.9
73.3
36.3
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
CAMK1G
Ensembl Gene ID:
ENSAPLG00000010810
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011272
4945297 - 4953668
8372