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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4950817_4953550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4950817 - 4953550
Intron Length:
2734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTCCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATCTATTGAAAT
Flanking Amino Acid:
KTFIFMEALGSGAFSEVFLV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
84.9
0.78
0.7
79.7
25.7
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
50.3
0.09
1.7
69.65
40.9

Associated Gene:

Gene:
CAMK1G
Ensembl Gene ID:
ENSAPLG00000010810
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011272
4945297 - 4953668
8372