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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4986903_5027374_F

Intron Information:

Intron Rank:
123479
Intron Class:
major
Intron Phase:
Intron Coordinates:
4986903 - 5027374
Intron Length:
40472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.8
77.5
34.9
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016587
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018681
4986192 - 5027441
41250