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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5119707_5258022_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5119707 - 5258022
Intron Length:
138316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
AATCCCTTGCTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
76.6
0.6
0.7
70
30.9
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
43.4
-0.5
3.4
62.28
37.2

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490