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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5204301_5258022_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5204301 - 5258022

Intron Length:

53722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

AATCCCTTGCTC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

73.7

32.5

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

76.6

0.6

0.7

30.9

Minor 5ss

25.2

-2.9

3.2

30.3

43.5

Minor BPS

43.4

-0.5

3.4

62.28

37.2

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083