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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5259278_5259932_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5259278 - 5259932
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTTGCTCACAG
Flanking Amino Acid:
LGKDVQCTKAPVPIDDNFCG
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
88.1
0.86
0.7
80.4
31.6
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
45.7
-0.4
2.3
60.81
46.6

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242