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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5300855_5326291_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5300855 - 5326291
Intron Length:
25437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGACAC
U12 Branch Point Sequence:
ACACGCTGAGGC
Flanking Amino Acid:
KYLYVMSERQVSRVPVESCE
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
45.1
-0.3
1.1
48
35.4
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
36.7
-1
2
39.96
39

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242
ENSAPLT00000043830
5113775 - 5385264
271490