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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5326393_5330130_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5326393 - 5330130

Intron Length:

3738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTCCG

5'SS Class:

strong_major

3'SS Sequence:

CCGTGTGTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GTGTGCTGACGT

Flanking Amino Acid:

PHCGWCTLHHMCSPRDSCER

Intron Amino Acid Position:

536

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.3

42.6

Major BPS

66.3

0.4

1.1

41.8

Major PPT

60.6

0.24

1.1

52.9

45.9

Minor 5ss

-1.5

2.9

47.4

Minor BPS

42.4

-0.5

2.3

61.1

48.2

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043830

5113775 - 5385264

271490

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000010346

5258023 - 5385264

127242