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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5331219_5332099_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5331219 - 5332099
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACTG
Flanking Amino Acid:
KDVPAIPVDQDWFGVVLQLK
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
40.9
-0.8
2
41.42
43.3

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000010346
5258023 - 5385264
127242