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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5332197_5334417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5332197 - 5334417

Intron Length:

2221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

TTCTCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

TCCCCTGTAACC

Flanking Amino Acid:

FKFYNCSAHQLCLSCVNSAF

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

59.1

39.9

Major BPS

62.2

0.3

1.2

38.7

Major PPT

74.4

0.55

0.8

67.4

33.9

Minor 5ss

30.5

-2.2

3.2

42.5

44.2

Minor BPS

0.01

63.03

43.1

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490