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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5334533_5341919_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5334533 - 5341919
Intron Length:
7387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGAC
5'SS Class:
major
3'SS Sequence:
CTCTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CCCGCCGTGACC
Flanking Amino Acid:
FQEGRINVSEDCPQLFPTEE
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
60.6
39
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
73.9
0.54
0.8
65.2
36.3
Minor 5ss
35.2
-1.7
3.6
50
46.5
Minor BPS
46
-0.3
2.2
52.61
45.8

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242