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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5334533_5343942_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5334533 - 5343942
Intron Length:
9410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGAC
5'SS Class:
major
3'SS Sequence:
GTTTCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
GGCATCTCACTC
Flanking Amino Acid:
FQEGRINVSEYLYDGMDISN
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
60.6
39
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
81.1
0.7
0.8
73.4
37.1
Minor 5ss
35.2
-1.7
3.6
50
46.5
Minor BPS
42.3
-0.6
1.7
44.21
37.7

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010346
5258023 - 5385264
127242