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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5342121_5343942_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5342121 - 5343942

Intron Length:

1822

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

GTTTCTTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

GGCATCTCACTC

Flanking Amino Acid:

SSSVQCQNSSYLYDGMDISN

Intron Amino Acid Position:

642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

55.1

43.9

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

81.1

0.7

0.8

73.4

37.1

Minor 5ss

23.7

-3

3.3

29.1

43.5

Minor BPS

42.3

-0.6

1.7

44.21

37.7

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043830

5113775 - 5385264

271490

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242