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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5344040_5344241_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5344040 - 5344241
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GGAGAAGCAACT
Flanking Amino Acid:
FVIDNPEDLKVHLYKCAAQR
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
34.8
-1
2.2
49.32
42.9

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242
ENSAPLT00000043830
5113775 - 5385264
271490