Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5344436_5348615_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5344436 - 5348615

Intron Length:

4180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTGAC

U12 Branch Point Sequence:

CGCAGCTTGACC

Flanking Amino Acid:

VKCSNPRITEILTVSGPPEG

Intron Amino Acid Position:

797

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

72.5

37.3

Major BPS

56.2

0.15

1.3

44.3

Major PPT

74.9

0.56

0.8

66.7

35.7

Minor 5ss

30.7

-2.2

3.3

39.2

46.2

Minor BPS

48.4

-0.1

1.9

54.96

43.5

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490