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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5348768_5351807_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5348768 - 5351807
Intron Length:
3040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ACCTCCTGACAA
Flanking Amino Acid:
PLPEQYVVAEQIVCEMGQAL
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
47.4
-0.2
1.8
55.68
43.1

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242
ENSAPLT00000043830
5113775 - 5385264
271490