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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5351926_5354070_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5351926 - 5354070

Intron Length:

2145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CACTGCTGACCT

Flanking Amino Acid:

ARSAQQYSFVTPAVSFLTPS

Intron Amino Acid Position:

887

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

66.3

0.4

1.1

41.8

Major PPT

81.6

0.71

0.8

76.1

32.6

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

45.3

-0.2

2.1

61.45

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490