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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5354208_5357586_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5354208 - 5357586

Intron Length:

3379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

CTCTCCTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

CTCTCCTGCACA

Flanking Amino Acid:

LLGNQSCTFQGRSTNEIVCM

Intron Amino Acid Position:

932

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

65.4

40.4

Major BPS

61.3

0.28

52.7

34.2

Major PPT

72.5

0.51

0.9

67.4

32.5

Minor 5ss

29.1

-2.4

3.5

32.5

42.6

Minor BPS

55.1

0.15

67.78

44.7

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490

ENSAPLT00000033195

5204187 - 5384269

180083