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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5359935_5360323_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5359935 - 5360323

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

TCTTCTCCACCT

Flanking Amino Acid:

QKPGSPIILKGKNLCPPAPG

Intron Amino Acid Position:

1100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.5

35.6

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

70.9

0.47

64.2

41.5

Minor 5ss

29.3

-2.4

3.5

40.3

46.1

Minor BPS

47.7

-0

2.1

72.5

44.6

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490