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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5360468_5361597_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5360468 - 5361597

Intron Length:

1130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGGACC

5'SS Class:

major

3'SS Sequence:

CTGTGCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTCTGCTCACCC

Flanking Amino Acid:

PNLTGQHKVTVRVGGIVFSP

Intron Amino Acid Position:

1148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

63.9

39.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

79.2

0.66

0.9

72.8

37.5

Minor 5ss

32.6

-2

3.4

44.3

43.5

Minor BPS

45.4

-0.3

2.2

57.93

47.1

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242

ENSAPLT00000043830

5113775 - 5385264

271490