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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5361833_5362750_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5361833 - 5362750
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTACC
5'SS Class:
major
3'SS Sequence:
TTCTCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTCTCCCCAACA
Flanking Amino Acid:
ESRVALECKEAFAELQTDIN
Intron Amino Acid Position:
1226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
69.7
41.3
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
75
0.56
0.8
70.3
29.2
Minor 5ss
32
-2.1
2.5
31
34.4
Minor BPS
61.4
0.35
1.9
76.63
40.3

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242