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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5364476_5368497_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5364476 - 5368497

Intron Length:

4022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCGCGG

5'SS Class:

major

3'SS Sequence:

CTGGCTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCGTAA

U12 Branch Point Sequence:

TGGTCCGTAACG

Flanking Amino Acid:

NKNHPKLLLRRTESVAEKML

Intron Amino Acid Position:

1363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.3

0.29

1.3

46.1

49.1

Major BPS

47.9

-0.1

1.4

45.6

39.5

Major PPT

63.5

0.3

0.9

54.7

36.5

Minor 5ss

34.3

-1.8

3.5

47.2

48.2

Minor BPS

60.6

0.19

2.1

68.02

45.3

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043830

5113775 - 5385264

271490

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242