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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5368565_5369274_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5368565 - 5369274

Intron Length:

710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

GTCTCGTTGGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

TCCGTGTCAGTT

Flanking Amino Acid:

FAFLLHKFLKECAGEPLFML

Intron Amino Acid Position:

1386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

0.34

61.3

40.1

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

37.5

-0.8

2.2

50.49

44.6

Associated Gene:

Gene:

PLXNA2

Ensembl Gene ID:

ENSAPLG00000009851

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043830

5113775 - 5385264

271490

ENSAPLT00000033195

5204187 - 5384269

180083

ENSAPLT00000011375

5258023 - 5385264

127242

ENSAPLT00000010346

5258023 - 5385264

127242