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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5369422_5369744_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5369422 - 5369744
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
CCCTCAGGGACC
Flanking Amino Acid:
IRQQIEYKTLILNCVNPDNE
Intron Amino Acid Position:
1435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
84.7
0.78
0.7
76.3
32.3
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
39.6
-0.8
2.3
47
42.7

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242
ENSAPLT00000043830
5113775 - 5385264
271490