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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5369905_5370067_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5369905 - 5370067
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGAGCC
5'SS Class:
major
3'SS Sequence:
GTCTCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
CCTTCCCCAACT
Flanking Amino Acid:
QRPRAVDMDLEWRQGRIARV
Intron Amino Acid Position:
1488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.7
39.5
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
79.6
0.67
0.8
73.5
31.5
Minor 5ss
29.9
-2.3
3.5
33.9
41.8
Minor BPS
57.6
0.32
2
76.94
45.3

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242