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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5374494_5376569_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5374494 - 5376569
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGAAT
U12 Branch Point Sequence:
TGTGGCTGACCT
Flanking Amino Acid:
SISRTSISRYDSTFRYTGSP
Intron Amino Acid Position:
1556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.2
40.5
Major BPS
48.7
-0
1.5
57.6
45.8
Major PPT
67
0.38
0.9
64.4
36.2
Minor 5ss
34.3
-1.8
3
44.9
42.8
Minor BPS
46.3
-0.2
2.2
69.32
47.1

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242
ENSAPLT00000043830
5113775 - 5385264
271490