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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5377473_5383444_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5377473 - 5383444
Intron Length:
5972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
CATTTCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
TDVRHTWKSNCLPLRFWVNV
Intron Amino Acid Position:
1676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
66.9
38.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
77
0.61
0.8
74
30.7
Minor 5ss
28.5
-2.5
2.7
29.9
36.3
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
PLXNA2
Ensembl Gene ID:
ENSAPLG00000009851
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043830
5113775 - 5385264
271490
ENSAPLT00000033195
5204187 - 5384269
180083
ENSAPLT00000011375
5258023 - 5385264
127242
ENSAPLT00000010346
5258023 - 5385264
127242