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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5417000_5417724_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5417000 - 5417724
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTGTG
5'SS Class:
major
3'SS Sequence:
CATTTCTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
SSTVPALESLAADTARPAAA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
70.8
39.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.3
0.44
1
67.6
37.7
Minor 5ss
36.5
-1.5
3.3
46.1
43.5
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
CD34
Ensembl Gene ID:
ENSAPLG00000001429
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035323
5412156 - 5423799
11644
ENSAPLT00000001428
5412156 - 5422646
10491