Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5420900_5421210_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5420900 - 5421210

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTAAAAATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

CTTGTGTTAAAA

Flanking Amino Acid:

CLLLILVNETDPATDVLQES

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

68.2

0.41

1.1

60.1

44.4

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

48.1

-0.1

2.2

63.42

43.3

Associated Gene:

Gene:

CD34

Ensembl Gene ID:

ENSAPLG00000001429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035323

5412156 - 5423799

11644

ENSAPLT00000001428

5412156 - 5422646

10491