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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5472080_5495962_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5472080 - 5495962
Intron Length:
23883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCG
5'SS Class:
major
3'SS Sequence:
TGCTCTGGCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
TTTTTCTTCCCT
Flanking Amino Acid:
MGEEEEVCSPPERLQY
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.5
39.8
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
47.4
-0.1
1.7
52.2
41.7
Minor 5ss
23.9
-3
3.3
29.6
43.4
Minor BPS
47.6
-0.1
3.6
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026076
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028447
5465538 - 5495980
30443