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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5472082_5472916_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5472082 - 5472916
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TGTGCTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TTTTTCTTCCCT
Flanking Amino Acid:
VVLLGEARAEEVCSPPERLQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.1
37.5
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
70.2
0.45
1
65.7
40.9
Minor 5ss
26.7
-2.7
2.9
25.6
36.9
Minor BPS
47.6
-0.1
3.6
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026076
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039979
5465538 - 5474734
9197