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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5473844_5474649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5473844 - 5474649
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTAATTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.3
0.59
0.8
69.2
37
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
64.8
0.46
1.3
68.15
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026076
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039979
5465538 - 5474734
9197