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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5474735_5474980_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5474735 - 5474980
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTTTTTCATGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATG
Flanking Amino Acid:
IWKIISKQKQGFYHTYENYN
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
78
29.6
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
53.4
-0
1.8
61.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020617
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030333
5474653 - 5482271
7619
ENSAPLT00000021037
5474653 - 5482271
7619