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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5479205_5479605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5479205 - 5479605
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
ATGCTGCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTGTTTTCAACT
Flanking Amino Acid:
WHPPVPVCEQDGVAEHYHHL
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
61.2
0.25
1
52
42.5
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
62.8
0.48
1.5
76.32
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020617
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021037
5474653 - 5482271
7619