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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5481488_5481823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5481488 - 5481823
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TGCTTCACAACA
Flanking Amino Acid:
SWSTPHPRCEVSSVLQCPSP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
84.3
0.77
0.8
76.4
37.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
50.6
0.02
1.8
65.1
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020617
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030333
5474653 - 5482271
7619
ENSAPLT00000021037
5474653 - 5482271
7619