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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5485628_5489489_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5485628 - 5489489

Intron Length:

3862

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAT|GCACAGACA

5'SS Class:

weak_major

3'SS Sequence:

GAAACAAGTTAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAGTAAT

U12 Branch Point Sequence:

TACTCAGGAAAA

Flanking Amino Acid:

NTPRALPFPAYAVLSHRGWL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.4

60.8

37.4

Major BPS

67.8

0.44

1.1

67.7

36.5

Major PPT

-0.2

1.2

39.5

42.4

Minor 5ss

22.9

-3.1

4.1

35.1

41.6

Minor BPS

42.2

-0.5

2.3

56.2

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039064

5482474 - 5489538

7065