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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5494633_5504768_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5494633 - 5504768
Intron Length:
10136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAAAGAC
5'SS Class:
weak_major
3'SS Sequence:
CTCCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
CTTGTCTGAACA
Flanking Amino Acid:
DNNWNPPLPKFIRCPPPYIK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.1
51.8
33
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
84.5
0.78
0.7
79.4
26
Minor 5ss
26.6
-2.7
3.4
32.7
42.5
Minor BPS
62.3
0.38
1.6
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029606
5494286 - 5508342
14057