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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5504943_5505589_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
5504943 - 5505589
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTTTTCTTT
5'SS Class:
weak_minor
3'SS Sequence:
CCTTCACTTGCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTACCTTCACT
Flanking Amino Acid:
SGPAPECKGRLVRCENPVVE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.9
-0
1.2
58.4
40.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80
0.68
0.8
73.4
30.3
Minor 5ss
66.6
0.56
2.2
79.2
34.6
Minor BPS
75.5
0.88
1.7
92.89
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029606
5494286 - 5508342
14057